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JAL-2439 Fixes to out-by-one sequence indexing in gui classes
[jalview.git]
/
src
/
jalview
/
appletgui
/
SeqCanvas.java
diff --git
a/src/jalview/appletgui/SeqCanvas.java
b/src/jalview/appletgui/SeqCanvas.java
index
fd74c4a
..
cd5aa74
100755
(executable)
--- a/
src/jalview/appletgui/SeqCanvas.java
+++ b/
src/jalview/appletgui/SeqCanvas.java
@@
-252,7
+252,7
@@
public class SeqCanvas extends Panel
}
else
{
}
else
{
- transY = imgHeight - vertical * avcharHeight;
+ transY = imgHeight - ((vertical + 1) * avcharHeight);
}
}
else if (vertical < 0)
}
}
else if (vertical < 0)
@@
-613,7
+613,7
@@
public class SeqCanvas extends Panel
// / First draw the sequences
// ///////////////////////////
// / First draw the sequences
// ///////////////////////////
- for (int i = startSeq; i < endSeq; i++)
+ for (int i = startSeq; i <= endSeq; i++)
{
nextSeq = av.getAlignment().getSequenceAt(i);
{
nextSeq = av.getAlignment().getSequenceAt(i);
@@
-697,7
+697,7
@@
public class SeqCanvas extends Panel
int bottom = -1;
int alHeight = av.getAlignment().getHeight() - 1;
int bottom = -1;
int alHeight = av.getAlignment().getHeight() - 1;
- for (i = startSeq; i < endSeq; i++)
+ for (i = startSeq; i <= endSeq; i++)
{
sx = (group.getStartRes() - startRes) * avcharWidth;
sy = offset + ((i - startSeq) * avcharHeight);
{
sx = (group.getStartRes() - startRes) * avcharWidth;
sy = offset + ((i - startSeq) * avcharHeight);