- "ANNOTATIONCOLOUR_MAX", "ANNOTATIONCOLOUR_MIN", "annotations",
+ Preferences.ANNOTATIONCOLOUR_MAX, Preferences.ANNOTATIONCOLOUR_MIN,
+ "annotations",
"APPLICATION_URL", "automaticScrolling", "centrecolumnlabels",
"debug", "defaultColour", "defaultColourNuc", "defaultColourProt",
"embedded", "enableSplitFrame", "externalstructureviewer", "features",
"APPLICATION_URL", "automaticScrolling", "centrecolumnlabels",
"debug", "defaultColour", "defaultColourNuc", "defaultColourProt",
"embedded", "enableSplitFrame", "externalstructureviewer", "features",
- appName = "ANNOTATIONCOLOUR_MIN";
+ appName = Preferences.ANNOTATIONCOLOUR_MIN;
+ break;
+ case "enablesplitframe":
+ appName = Preferences.ENABLE_SPLIT_FRAME;
+ break;
+ case "hidefeaturegroups":
- case "enablesplitframe":
- appName = "enableSplitFrame";
+ case "pdbseq":
+ appName = null;
+ break;
+ case "sortby":
+ appName = Preferences.SORT_ALIGNMENT; // id, etc.
+ break;
+ case "sortbytree":
+ appName = Preferences.SORT_BY_TREE;
+ value = checkTF(value);
+ appletName = null; // taken care of by Jalview