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Merge branch 'features/JAL-4071_visibleFeaturesCounter' into features/JAL-3417_sdppre...
[jalview.git]
/
src
/
jalview
/
datamodel
/
Alignment.java
diff --git
a/src/jalview/datamodel/Alignment.java
b/src/jalview/datamodel/Alignment.java
index
15423b1
..
f389ad8
100755
(executable)
--- a/
src/jalview/datamodel/Alignment.java
+++ b/
src/jalview/datamodel/Alignment.java
@@
-202,7
+202,7
@@
public class Alignment implements AlignmentI, AutoCloseable
{
synchronized (sequences)
{
{
synchronized (sequences)
{
-
+
if (i > -1 && i < sequences.size())
{
return sequences.get(i);
if (i > -1 && i < sequences.size())
{
return sequences.get(i);
@@
-723,7
+723,7
@@
public class Alignment implements AlignmentI, AutoCloseable
public int getWidth()
{
int maxLength = -1;
public int getWidth()
{
int maxLength = -1;
-
+
for (int i = 0; i < sequences.size(); i++)
{
maxLength = Math.max(maxLength, getSequenceAt(i).getLength());
for (int i = 0; i < sequences.size(); i++)
{
maxLength = Math.max(maxLength, getSequenceAt(i).getLength());