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JAL-3210 Improvements to eclipse detection. New src tree and SwingJS updated from...
[jalview.git]
/
src
/
jalview
/
datamodel
/
AlignmentAnnotation.java
diff --git
a/src/jalview/datamodel/AlignmentAnnotation.java
b/src/jalview/datamodel/AlignmentAnnotation.java
index
2ee4503
..
ee9389c
100755
(executable)
--- a/
src/jalview/datamodel/AlignmentAnnotation.java
+++ b/
src/jalview/datamodel/AlignmentAnnotation.java
@@
-991,7
+991,7
@@
public class AlignmentAnnotation
seqPos = i + startRes;
}
seqPos = i + startRes;
}
- sequenceMapping.put(Integer.valueOf(seqPos), annotations[i]);
+ sequenceMapping.put(new Integer(seqPos), annotations[i]);
}
}
}
}
@@
-1030,7
+1030,7
@@
public class AlignmentAnnotation
{
for (a = sequenceRef.getStart(); a <= sequenceRef.getEnd(); a++)
{
{
for (a = sequenceRef.getStart(); a <= sequenceRef.getEnd(); a++)
{
- index = Integer.valueOf(a);
+ index = new Integer(a);
Annotation annot = sequenceMapping.get(index);
if (annot != null)
{
Annotation annot = sequenceMapping.get(index);
if (annot != null)
{