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JAL-3210 Barebones gradle/buildship/eclipse. See README
[jalview.git]
/
src
/
jalview
/
datamodel
/
DBRefSource.java
diff --git
a/src/jalview/datamodel/DBRefSource.java
b/src/jalview/datamodel/DBRefSource.java
index
71d6972
..
2f94884
100755
(executable)
--- a/
src/jalview/datamodel/DBRefSource.java
+++ b/
src/jalview/datamodel/DBRefSource.java
@@
-42,8
+42,7
@@
public class DBRefSource
public static final String UNIPROT = "UNIPROT";
public static final String UNIPROT = "UNIPROT";
-
- public static final String UP_NAME = "UNIPROT_NAME";
+ public static final String UP_NAME = "UNIPROT_NAME".toUpperCase();
/**
* Uniprot Knowledgebase/TrEMBL as served from EMBL protein products.
*/
/**
* Uniprot Knowledgebase/TrEMBL as served from EMBL protein products.
*/
@@
-57,18
+56,10
@@
public class DBRefSource
public static final String EMBLCDSProduct = "EMBLCDSProtein".toUpperCase();
public static final String PDB = "PDB";
public static final String EMBLCDSProduct = "EMBLCDSProtein".toUpperCase();
public static final String PDB = "PDB";
-
- public static final String PFAM = "PFAM";
-
+ public static final String PFAM = "PFAM";
public static final String RFAM = "RFAM";
public static final String GENEDB = "GeneDB".toUpperCase();
public static final String RFAM = "RFAM";
public static final String GENEDB = "GeneDB".toUpperCase();
- public static final String PFAM_FULL = "PFAM (Full)";
-
- public static final String PFAM_SEED = "PFAM (Seed)";
-
- public static final String RFAM_SEED = "RFAM (Seed)";
-
public static final String PDB_CANONICAL_NAME = PDB;
public static final String PDB_CANONICAL_NAME = PDB;
@@
-144,7
+135,7
@@
public class DBRefSource
// CODINGDBS, DNACODINGDBS, PROTEINDBS };
//
public static final int PRIMARY_SOURCES_MASK = CODING_MASK | DNA_CODING_MASK | PROTEIN_MASK;
// CODINGDBS, DNACODINGDBS, PROTEINDBS };
//
public static final int PRIMARY_SOURCES_MASK = CODING_MASK | DNA_CODING_MASK | PROTEIN_MASK;
-
+
public static boolean isPrimarySource(String source)
{
return ((PRIMARY_SOURCES_MASK & getSourceKey(source)) != 0);
public static boolean isPrimarySource(String source)
{
return ((PRIMARY_SOURCES_MASK & getSourceKey(source)) != 0);