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Merge develop to Release_2_8_3_Branch
[jalview.git]
/
src
/
jalview
/
datamodel
/
DBRefSource.java
diff --git
a/src/jalview/datamodel/DBRefSource.java
b/src/jalview/datamodel/DBRefSource.java
index
b1824f7
..
6982594
100755
(executable)
--- a/
src/jalview/datamodel/DBRefSource.java
+++ b/
src/jalview/datamodel/DBRefSource.java
@@
-38,12
+38,15
@@
public class DBRefSource
/**
* UNIPROT Entry Name
*/
/**
* UNIPROT Entry Name
*/
- public static String UP_NAME = "UNIPROT_NAME";
+ public static String UP_NAME = "UNIPROT_NAME".toUpperCase();
/**
* Uniprot Knowledgebase/TrEMBL as served from EMBL protein products.
*/
/**
* Uniprot Knowledgebase/TrEMBL as served from EMBL protein products.
*/
- public static final String UNIPROTKB = "UniProtKB/TrEMBL";
+ public static final String UNIPROTKB = "UniProtKB/TrEMBL".toUpperCase();
+
+ public static final String EMBLCDSProduct = "EMBLCDSProtein"
+ .toUpperCase();
/**
* PDB Entry Code
/**
* PDB Entry Code
@@
-73,7
+76,7
@@
public class DBRefSource
/**
* GeneDB ID
*/
/**
* GeneDB ID
*/
- public static final String GENEDB = "GeneDB";
+ public static final String GENEDB = "GeneDB".toUpperCase();
/**
* List of databases whose sequences might have coding regions annotated
/**
* List of databases whose sequences might have coding regions annotated
@@
-85,10
+88,10
@@
public class DBRefSource
{ EMBLCDS, GENEDB };
public static final String[] PROTEINDBS =
{ EMBLCDS, GENEDB };
public static final String[] PROTEINDBS =
- { UNIPROT, PDB, UNIPROTKB };
+ { UNIPROT, PDB, UNIPROTKB, EMBLCDSProduct };
public static final String[] PROTEINSEQ =
public static final String[] PROTEINSEQ =
- { UNIPROT, UNIPROTKB };
+ { UNIPROT, UNIPROTKB, EMBLCDSProduct };
public static final String[] PROTEINSTR =
{ PDB };
public static final String[] PROTEINSTR =
{ PDB };