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JAL-3303 ignore deletions when computing peptide variants
[jalview.git]
/
src
/
jalview
/
datamodel
/
MappedFeatures.java
diff --git
a/src/jalview/datamodel/MappedFeatures.java
b/src/jalview/datamodel/MappedFeatures.java
index
25f5ba4
..
4c63916
100644
(file)
--- a/
src/jalview/datamodel/MappedFeatures.java
+++ b/
src/jalview/datamodel/MappedFeatures.java
@@
-144,7
+144,7
@@
public class MappedFeatures
for (String allele : alleles)
{
allele = allele.trim().toUpperCase();
for (String allele : alleles)
{
allele = allele.trim().toUpperCase();
- if (allele.length() > 1)
+ if (allele.length() > 1 || "-".equals(allele))
{
continue; // multi-locus variant
}
{
continue; // multi-locus variant
}