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JAL-98 JAL-1854 encapsulate 'magic number' threshold 3 in Conservation
[jalview.git]
/
src
/
jalview
/
datamodel
/
SequenceGroup.java
diff --git
a/src/jalview/datamodel/SequenceGroup.java
b/src/jalview/datamodel/SequenceGroup.java
index
2870a2c
..
ca90003
100755
(executable)
--- a/
src/jalview/datamodel/SequenceGroup.java
+++ b/
src/jalview/datamodel/SequenceGroup.java
@@
-543,8
+543,8
@@
public class SequenceGroup implements AnnotatedCollectionI
if ((conservation != null)
|| (cs != null && cs.conservationApplied()))
{
if ((conservation != null)
|| (cs != null && cs.conservationApplied()))
{
- Conservation c = new Conservation(groupName, 3, sequences,
- startRes, endRes + 1);
+ Conservation c = new Conservation(groupName, sequences, startRes,
+ endRes + 1);
c.calculate();
c.verdict(false, consPercGaps);
if (conservation != null)
c.calculate();
c.verdict(false, consPercGaps);
if (conservation != null)