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JAL-2381 copy and paste sequence also copies contact matrix annotation
[jalview.git]
/
src
/
jalview
/
datamodel
/
SequenceGroup.java
diff --git
a/src/jalview/datamodel/SequenceGroup.java
b/src/jalview/datamodel/SequenceGroup.java
index
b356894
..
81f8664
100755
(executable)
--- a/
src/jalview/datamodel/SequenceGroup.java
+++ b/
src/jalview/datamodel/SequenceGroup.java
@@
-311,6
+311,11
@@
public class SequenceGroup implements AnnotatedCollectionI
newannot.restrict(startRes, endRes);
newannot.setSequenceRef(seqs[ipos]);
newannot.adjustForAlignment();
newannot.restrict(startRes, endRes);
newannot.setSequenceRef(seqs[ipos]);
newannot.adjustForAlignment();
+ ContactMatrixI cm = seq.getContactMatrixFor(seq.getAnnotation()[a]);
+ if (cm!=null)
+ {
+ seqs[ipos].addContactListFor(newannot, cm);
+ }
seqipos.addAlignmentAnnotation(newannot);
}
}
seqipos.addAlignmentAnnotation(newannot);
}
}