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JAL-2349 JAL-3855 Integrate pAE retrieval in StructureFile so it can be transferred...
[jalview.git]
/
src
/
jalview
/
datamodel
/
SequenceGroup.java
diff --git
a/src/jalview/datamodel/SequenceGroup.java
b/src/jalview/datamodel/SequenceGroup.java
index
6a0e64c
..
b356894
100755
(executable)
--- a/
src/jalview/datamodel/SequenceGroup.java
+++ b/
src/jalview/datamodel/SequenceGroup.java
@@
-1499,6
+1499,12
@@
public class SequenceGroup implements AnnotatedCollectionI
}
@Override
}
@Override
+ public ContactMatrixI getContactMatrixFor(AlignmentAnnotation ann)
+ {
+ return cmholder.getContactMatrixFor(ann);
+ }
+
+ @Override
public ContactListI getContactListFor(AlignmentAnnotation _aa, int column)
{
return cmholder.getContactListFor(_aa, column);
public ContactListI getContactListFor(AlignmentAnnotation _aa, int column)
{
return cmholder.getContactListFor(_aa, column);
@@
-1519,4
+1525,12
@@
public class SequenceGroup implements AnnotatedCollectionI
// TODO passing annotations back to context to be added
return aa;
}
// TODO passing annotations back to context to be added
return aa;
}
+
+ @Override
+ public void addContactListFor(AlignmentAnnotation annotation,
+ ContactMatrixI cm)
+ {
+ cmholder.addContactListFor(annotation, cm);
+ }
+
}
}