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JAL-1953 more javadoc comments
[jalview.git]
/
src
/
jalview
/
ext
/
archaeopteryx
/
JalviewBinding.java
diff --git
a/src/jalview/ext/archaeopteryx/JalviewBinding.java
b/src/jalview/ext/archaeopteryx/JalviewBinding.java
index
f0c2866
..
b38ac1c
100644
(file)
--- a/
src/jalview/ext/archaeopteryx/JalviewBinding.java
+++ b/
src/jalview/ext/archaeopteryx/JalviewBinding.java
@@
-298,7
+298,7
@@
public final class JalviewBinding
.get(selectedSequence);
if (matchingNode != null)
{
.get(selectedSequence);
if (matchingNode != null)
{
- treeView.getMatchingNodes().add(matchingNode.getId());
+ treeView.addToMatchingNodes(matchingNode);
// if (!matchingNode.getBranchData().isHasBranchColor())
// if (!matchingNode.getBranchData().isHasBranchColor())
@@
-323,6
+323,7
@@
public final class JalviewBinding
/**
* Partially refactored from TreeCanvas
*/
/**
* Partially refactored from TreeCanvas
*/
+ @Override
public void partitionTree(final int x)
{
TreeI tree = treeView.getTree();
public void partitionTree(final int x)
{
TreeI tree = treeView.getTree();
@@
-554,7
+555,7
@@
public final class JalviewBinding
if (matchingSequence != null)
{
long nodeId = nodeToMatch.getId();
if (matchingSequence != null)
{
long nodeId = nodeToMatch.getId();
- addOrRemoveInSet(treeView.getMatchingNodes(), nodeId);
+ addOrRemoveInSet(treeView.getMatchingNodesIds(), nodeId);
treeSelectionChanged(matchingSequence);
parentAvport.sendSelection();
treeSelectionChanged(matchingSequence);
parentAvport.sendSelection();
@@
-575,7
+576,7
@@
public final class JalviewBinding
if (matchingSequence != null)
{
long nodeId = childNode.getId();
if (matchingSequence != null)
{
long nodeId = childNode.getId();
- addOrRemoveInSet(treeView.getMatchingNodes(), nodeId);
+ addOrRemoveInSet(treeView.getMatchingNodesIds(), nodeId);
treeSelectionChanged(matchingSequence);
treeSelectionChanged(matchingSequence);