- MappingUtils.putWithDuplicationCheck(alignmentWithNodes,
- nodeSequence, treeNode);
- MappingUtils.putWithDuplicationCheck(nodesWithAlignment,
- treeNode, nodeSequence);
+ nodeSequence = algnIds.findIdMatch(nodeSequenceName);
+ if (nodeSequence != null)
+ {
+ org.forester.phylogeny.data.Sequence foresterNodeSeq = DataConversions
+ .createForesterSequence(nodeSequence, true);
+ treeNode.getNodeData().setSequence(foresterNodeSeq);