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JAL-1705 derive transcript sequences from gene sequence/GFF; handle CDS
[jalview.git]
/
src
/
jalview
/
ext
/
ensembl
/
EnsemblProtein.java
diff --git
a/src/jalview/ext/ensembl/EnsemblProtein.java
b/src/jalview/ext/ensembl/EnsemblProtein.java
index
5238f98
..
8a57a16
100644
(file)
--- a/
src/jalview/ext/ensembl/EnsemblProtein.java
+++ b/
src/jalview/ext/ensembl/EnsemblProtein.java
@@
-2,6
+2,7
@@
package jalview.ext.ensembl;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.SequenceFeature;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.SequenceFeature;
+import jalview.datamodel.SequenceI;
public class EnsemblProtein extends EnsemblSeqProxy
{
public class EnsemblProtein extends EnsemblSeqProxy
{
@@
-46,7
+47,8
@@
public class EnsemblProtein extends EnsemblSeqProxy
* applicable to the protein product sequence
*/
@Override
* applicable to the protein product sequence
*/
@Override
- protected void addFeaturesAndProduct(String accId, AlignmentI alignment)
+ protected void addFeaturesAndProduct(String accId, AlignmentI alignment,
+ SequenceI genomicSequence)
{
}
{
}