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JAL-3148 show/hide features on structure independent of alignment
[jalview.git]
/
src
/
jalview
/
ext
/
jmol
/
JalviewJmolBinding.java
diff --git
a/src/jalview/ext/jmol/JalviewJmolBinding.java
b/src/jalview/ext/jmol/JalviewJmolBinding.java
index
7a8bc9c
..
eb13c30
100644
(file)
--- a/
src/jalview/ext/jmol/JalviewJmolBinding.java
+++ b/
src/jalview/ext/jmol/JalviewJmolBinding.java
@@
-175,7
+175,7
@@
public abstract class JalviewJmolBinding extends AAStructureBindingModel
@Override
public void colourByChain()
{
@Override
public void colourByChain()
{
- super.colourByChain();
+ super.colourByChain();
// TODO: colour by chain should colour each chain distinctly across all
// visible models
// TODO: http://issues.jalview.org/browse/JAL-628
// TODO: colour by chain should colour each chain distinctly across all
// visible models
// TODO: http://issues.jalview.org/browse/JAL-628
@@
-518,10
+518,10
@@
public abstract class JalviewJmolBinding extends AAStructureBindingModel
*/
@Override
protected StructureMappingcommandSet[] getColourBySequenceCommands(
*/
@Override
protected StructureMappingcommandSet[] getColourBySequenceCommands(
- String[] files, SequenceRendererI sr, AlignmentViewPanel viewPanel)
+ String[] files, SequenceRendererI sr, AlignmentViewPanel viewPanel, boolean showFeatures)
{
return JmolCommands.getColourBySequenceCommand(getSsm(), files,
{
return JmolCommands.getColourBySequenceCommand(getSsm(), files,
- getSequence(), sr, viewPanel);
+ getSequence(), sr, viewPanel, showFeatures);
}
/**
}
/**