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JAL-3148 SequenceRenderer interface renamed SequenceRendererI
[jalview.git]
/
src
/
jalview
/
ext
/
jmol
/
JmolCommands.java
diff --git
a/src/jalview/ext/jmol/JmolCommands.java
b/src/jalview/ext/jmol/JmolCommands.java
index
8fb0de6
..
b2aeee4
100644
(file)
--- a/
src/jalview/ext/jmol/JmolCommands.java
+++ b/
src/jalview/ext/jmol/JmolCommands.java
@@
-23,7
+23,7
@@
package jalview.ext.jmol;
import jalview.api.AlignViewportI;
import jalview.api.AlignmentViewPanel;
import jalview.api.FeatureRenderer;
import jalview.api.AlignViewportI;
import jalview.api.AlignmentViewPanel;
import jalview.api.FeatureRenderer;
-import jalview.api.SequenceRenderer;
+import jalview.api.SequenceRendererI;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.HiddenColumns;
import jalview.datamodel.SequenceI;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.HiddenColumns;
import jalview.datamodel.SequenceI;
@@
-55,7
+55,7
@@
public class JmolCommands
*/
public static StructureMappingcommandSet[] getColourBySequenceCommand(
StructureSelectionManager ssm, String[] files,
*/
public static StructureMappingcommandSet[] getColourBySequenceCommand(
StructureSelectionManager ssm, String[] files,
- SequenceI[][] sequence, SequenceRenderer sr,
+ SequenceI[][] sequence, SequenceRendererI sr,
AlignmentViewPanel viewPanel)
{
FeatureRenderer fr = viewPanel.getFeatureRenderer();
AlignmentViewPanel viewPanel)
{
FeatureRenderer fr = viewPanel.getFeatureRenderer();
@@
-69,8
+69,7
@@
public class JmolCommands
{
StructureMapping[] mapping = ssm.getMapping(files[pdbfnum]);
StringBuffer command = new StringBuffer();
{
StructureMapping[] mapping = ssm.getMapping(files[pdbfnum]);
StringBuffer command = new StringBuffer();
- StructureMappingcommandSet smc;
- ArrayList<String> str = new ArrayList<String>();
+ List<String> str = new ArrayList<>();
if (mapping == null || mapping.length < 1)
{
if (mapping == null || mapping.length < 1)
{