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JAL-1919 updated PDBSequenceFetcherTest and JMol parser config settings to enable...
[jalview.git]
/
src
/
jalview
/
ext
/
jmol
/
JmolParser.java
diff --git
a/src/jalview/ext/jmol/JmolParser.java
b/src/jalview/ext/jmol/JmolParser.java
index
0cbd620
..
31ed1b7
100644
(file)
--- a/
src/jalview/ext/jmol/JmolParser.java
+++ b/
src/jalview/ext/jmol/JmolParser.java
@@
-206,6
+206,12
@@
public class JmolParser extends StructureFile implements JmolStatusListener
List<Atom> significantAtoms = new ArrayList<Atom>();
for (org.jmol.modelset.Atom atom : ms.at)
{
List<Atom> significantAtoms = new ArrayList<Atom>();
for (org.jmol.modelset.Atom atom : ms.at)
{
+ System.out.println("Seq Id : " + atom.getSeqID());
+ System.out.println("To String : " + atom.toString());
+ if (atom.isHetero())
+ {
+ continue;
+ }
if (atom.getAtomName().equalsIgnoreCase("CA")
|| atom.getAtomName().equalsIgnoreCase("P"))
{
if (atom.getAtomName().equalsIgnoreCase("CA")
|| atom.getAtomName().equalsIgnoreCase("P"))
{