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Merge commit 'alpha/update_2_12_for_2_11_2_series_merge^2' into HEAD
[jalview.git]
/
src
/
jalview
/
ext
/
so
/
SequenceOntology.java
diff --git
a/src/jalview/ext/so/SequenceOntology.java
b/src/jalview/ext/so/SequenceOntology.java
index
89b2415
..
138aa58
100644
(file)
--- a/
src/jalview/ext/so/SequenceOntology.java
+++ b/
src/jalview/ext/so/SequenceOntology.java
@@
-115,7
+115,7
@@
public class SequenceOntology implements SequenceOntologyI
}
}
long elapsed = System.currentTimeMillis() - now;
}
}
long elapsed = System.currentTimeMillis() - now;
- System.out.println("Loaded Sequence Ontology from " + zipFile + " ("
+ Cache.log.info("Loaded Sequence Ontology from " + zipFile + " ("
+ elapsed + "ms)");
} catch (Exception e)
{
+ elapsed + "ms)");
} catch (Exception e)
{
@@
-337,7
+337,7
@@
public class SequenceOntology implements SequenceOntologyI
{
if (!termsNotFound.contains(term))
{
{
if (!termsNotFound.contains(term))
{
- System.err.println("SO term " + term + " invalid");
+ Cache.log.error("SO term " + term + " invalid");
termsNotFound.add(term);
}
}
termsNotFound.add(term);
}
}