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Merge branch 'develop' into bug/JAL-2314
[jalview.git]
/
src
/
jalview
/
gui
/
AlignFrame.java
diff --git
a/src/jalview/gui/AlignFrame.java
b/src/jalview/gui/AlignFrame.java
index
ab1ac0e
..
507bfab
100644
(file)
--- a/
src/jalview/gui/AlignFrame.java
+++ b/
src/jalview/gui/AlignFrame.java
@@
-2750,6
+2750,14
@@
public class AlignFrame extends GAlignFrame implements DropTargetListener,
*/
newap.av.replaceMappings(viewport.getAlignment());
*/
newap.av.replaceMappings(viewport.getAlignment());
+ /*
+ * start up cDNA consensus (if applicable) now mappings are in place
+ */
+ if (newap.av.initComplementConsensus())
+ {
+ newap.refresh(true); // adjust layout of annotations
+ }
+
newap.av.viewName = getNewViewName(viewTitle);
addAlignmentPanel(newap, true);
newap.av.viewName = getNewViewName(viewTitle);
addAlignmentPanel(newap, true);