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JAL-1988 Some TEST code accidentally left in now removed -- was affecting some saved...
[jalview.git]
/
src
/
jalview
/
gui
/
AlignFrame.java
diff --git
a/src/jalview/gui/AlignFrame.java
b/src/jalview/gui/AlignFrame.java
index
4ff1b4f
..
f3a8ab5
100644
(file)
--- a/
src/jalview/gui/AlignFrame.java
+++ b/
src/jalview/gui/AlignFrame.java
@@
-2092,7
+2092,7
@@
public class AlignFrame extends GAlignFrame implements DropTargetListener,
newGraphGroups.add(q, null);
}
newGraphGroups.set(newann.graphGroup,
newGraphGroups.add(q, null);
}
newGraphGroups.set(newann.graphGroup,
- new Integer(++fgroup));
+ Integer.valueOf(++fgroup));
}
newann.graphGroup = newGraphGroups.get(newann.graphGroup)
.intValue();
}
newann.graphGroup = newGraphGroups.get(newann.graphGroup)
.intValue();
@@
-2139,7
+2139,7
@@
public class AlignFrame extends GAlignFrame implements DropTargetListener,
newGraphGroups.add(q, null);
}
newGraphGroups.set(newann.graphGroup,
newGraphGroups.add(q, null);
}
newGraphGroups.set(newann.graphGroup,
- new Integer(++fgroup));
+ Integer.valueOf(++fgroup));
}
newann.graphGroup = newGraphGroups.get(newann.graphGroup)
.intValue();
}
newann.graphGroup = newGraphGroups.get(newann.graphGroup)
.intValue();
@@
-3104,7
+3104,7
@@
public class AlignFrame extends GAlignFrame implements DropTargetListener,
protected void scaleAbove_actionPerformed(ActionEvent e)
{
viewport.setScaleAboveWrapped(scaleAbove.isSelected());
protected void scaleAbove_actionPerformed(ActionEvent e)
{
viewport.setScaleAboveWrapped(scaleAbove.isSelected());
- // TODO: do we actually need to update overview for scale above change ?
+ alignPanel.updateLayout();
alignPanel.paintAlignment(true, false);
}
alignPanel.paintAlignment(true, false);
}
@@
-3118,6
+3118,7
@@
public class AlignFrame extends GAlignFrame implements DropTargetListener,
protected void scaleLeft_actionPerformed(ActionEvent e)
{
viewport.setScaleLeftWrapped(scaleLeft.isSelected());
protected void scaleLeft_actionPerformed(ActionEvent e)
{
viewport.setScaleLeftWrapped(scaleLeft.isSelected());
+ alignPanel.updateLayout();
alignPanel.paintAlignment(true, false);
}
alignPanel.paintAlignment(true, false);
}
@@
-3131,6
+3132,7
@@
public class AlignFrame extends GAlignFrame implements DropTargetListener,
protected void scaleRight_actionPerformed(ActionEvent e)
{
viewport.setScaleRightWrapped(scaleRight.isSelected());
protected void scaleRight_actionPerformed(ActionEvent e)
{
viewport.setScaleRightWrapped(scaleRight.isSelected());
+ alignPanel.updateLayout();
alignPanel.paintAlignment(true, false);
}
alignPanel.paintAlignment(true, false);
}
@@
-4489,7
+4491,8
@@
public class AlignFrame extends GAlignFrame implements DropTargetListener,
int assocfiles = 0;
if (filesmatched.size() > 0)
{
int assocfiles = 0;
if (filesmatched.size() > 0)
{
- boolean autoAssociate = Cache.getDefault("AUTOASSOCIATE_PDBANDSEQS", false);
+ boolean autoAssociate = Cache
+ .getDefault("AUTOASSOCIATE_PDBANDSEQS", false);
if (!autoAssociate)
{
String msg = MessageManager.formatMessage(
if (!autoAssociate)
{
String msg = MessageManager.formatMessage(