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Merge branch 'feature/JAL-3127_seqidChainshading' into merge/JAL-3127
[jalview.git]
/
src
/
jalview
/
gui
/
AlignViewport.java
diff --git
a/src/jalview/gui/AlignViewport.java
b/src/jalview/gui/AlignViewport.java
index
2e2289c
..
bc668fd
100644
(file)
--- a/
src/jalview/gui/AlignViewport.java
+++ b/
src/jalview/gui/AlignViewport.java
@@
-79,7
+79,7
@@
public class AlignViewport extends AlignmentViewport
private Rectangle explodedGeometry;
private Rectangle explodedGeometry;
- String viewName;
+ private String viewName;
/*
* Flag set true on the view that should 'gather' multiple views of the same
/*
* Flag set true on the view that should 'gather' multiple views of the same
@@
-290,7
+290,7
@@
public class AlignViewport extends AlignmentViewport
ResidueColourScheme.NONE);
}
ColourSchemeI colourScheme = ColourSchemeProperty
ResidueColourScheme.NONE);
}
ColourSchemeI colourScheme = ColourSchemeProperty
- .getColourScheme(alignment, schemeName);
+ .getColourScheme(this, alignment, schemeName);
residueShading = new ResidueShader(colourScheme);
if (colourScheme instanceof UserColourScheme)
residueShading = new ResidueShader(colourScheme);
if (colourScheme instanceof UserColourScheme)
@@
-304,6
+304,7
@@
public class AlignViewport extends AlignmentViewport
{
residueShading.setConsensus(hconsensus);
}
{
residueShading.setConsensus(hconsensus);
}
+ setColourAppliesToAllGroups(true);
}
boolean validCharWidth;
}
boolean validCharWidth;
@@
-1032,4
+1033,14
@@
public class AlignViewport extends AlignmentViewport
}
fr.setTransparency(featureSettings.getTransparency());
}
}
fr.setTransparency(featureSettings.getTransparency());
}
+
+ public String getViewName()
+ {
+ return viewName;
+ }
+
+ public void setViewName(String viewName)
+ {
+ this.viewName = viewName;
+ }
}
}