+\r
+ public void setIgnoreGapsConsensus(boolean b)\r
+ {\r
+ ignoreGapsInConsensusCalculation = b;\r
+ updateConsensus();\r
+ if(globalColourScheme!=null && globalColourScheme instanceof ResidueColourScheme)\r
+ {\r
+ ((ResidueColourScheme) globalColourScheme).setThreshold(\r
+ ((ResidueColourScheme) globalColourScheme).getThreshold(), ignoreGapsInConsensusCalculation);\r
+\r
+\r
+ }\r
+\r
+ }\r
+\r
+ public boolean getIgnoreGapsConsensus()\r
+ {\r
+ return ignoreGapsInConsensusCalculation;\r
+ }\r