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Bugfix to enable accurate chain extraction/association with models loaded in Chimera...
[jalview.git]
/
src
/
jalview
/
gui
/
JalviewChimeraBindingModel.java
diff --git
a/src/jalview/gui/JalviewChimeraBindingModel.java
b/src/jalview/gui/JalviewChimeraBindingModel.java
index
7a54732
..
78ab68d
100644
(file)
--- a/
src/jalview/gui/JalviewChimeraBindingModel.java
+++ b/
src/jalview/gui/JalviewChimeraBindingModel.java
@@
-32,11
+32,12
@@
public class JalviewChimeraBindingModel extends JalviewChimeraBinding
private FeatureRenderer fr = null;
private FeatureRenderer fr = null;
+
public JalviewChimeraBindingModel(ChimeraViewFrame chimeraViewFrame,
StructureSelectionManager ssm, PDBEntry[] pdbentry,
public JalviewChimeraBindingModel(ChimeraViewFrame chimeraViewFrame,
StructureSelectionManager ssm, PDBEntry[] pdbentry,
- SequenceI[][] sequenceIs, String[][] chains, String protocol)
+ SequenceI[][] sequenceIs, String protocol)
{
{
- super(ssm, pdbentry, sequenceIs, chains, protocol);
+ super(ssm, pdbentry, sequenceIs, protocol);
cvf = chimeraViewFrame;
}
cvf = chimeraViewFrame;
}
@@
-72,6
+73,7
@@
public class JalviewChimeraBindingModel extends JalviewChimeraBinding
{
javax.swing.SwingUtilities.invokeLater(new Runnable()
{
{
javax.swing.SwingUtilities.invokeLater(new Runnable()
{
+ @Override
public void run()
{
cvf.updateTitleAndMenus();
public void run()
{
cvf.updateTitleAndMenus();
@@
-80,6
+82,7
@@
public class JalviewChimeraBindingModel extends JalviewChimeraBinding
});
}
});
}
+ @Override
public void updateColours(Object source)
{
AlignmentPanel ap = (AlignmentPanel) source;
public void updateColours(Object source)
{
AlignmentPanel ap = (AlignmentPanel) source;
@@
-113,6
+116,7
@@
public class JalviewChimeraBindingModel extends JalviewChimeraBinding
* Send an asynchronous command to Chimera, in a new thread, optionally with
* an 'in progress' message in a progress bar somewhere
*/
* Send an asynchronous command to Chimera, in a new thread, optionally with
* an 'in progress' message in a progress bar somewhere
*/
+ @Override
protected void sendAsynchronousCommand(final String command,
final String progressMsg)
{
protected void sendAsynchronousCommand(final String command,
final String progressMsg)
{
@@
-135,4
+139,6
@@
public class JalviewChimeraBindingModel extends JalviewChimeraBinding
thread.start();
}
thread.start();
}
+
+
}
}