+package jalview.gui;
+
+import jalview.api.AlignmentViewPanel;
+import jalview.datamodel.PDBEntry;
+import jalview.datamodel.SequenceI;
+import jalview.ext.rbvi.chimera.JalviewChimeraBinding;
+import jalview.structure.StructureSelectionManager;
+
+public class JalviewChimeraBindingModel extends JalviewChimeraBinding
+{
+ private ChimeraViewFrame cvf;
+
+ public JalviewChimeraBindingModel(ChimeraViewFrame chimeraViewFrame,
+ StructureSelectionManager ssm, PDBEntry[] pdbentry,
+ SequenceI[][] sequenceIs, String[][] chains, String protocol)
+ {
+ super(ssm, pdbentry, sequenceIs, chains, protocol);
+ cvf = chimeraViewFrame;
+ }
+
+ FeatureRenderer fr = null;
+
+ @Override
+ public jalview.api.FeatureRenderer getFeatureRenderer(
+ AlignmentViewPanel alignment)
+ {
+ AlignmentPanel ap = (alignment == null) ? cvf.ap
+ : (AlignmentPanel) alignment;
+ if (ap.av.showSequenceFeatures)
+ {
+ if (fr == null)
+ {
+ fr = ap.cloneFeatureRenderer();
+ }
+ else
+ {
+ ap.updateFeatureRenderer(fr);
+ }
+ }
+
+ return fr;
+ }
+
+ @Override
+ public jalview.api.SequenceRenderer getSequenceRenderer(
+ AlignmentViewPanel alignment)
+ {
+ return new SequenceRenderer(((AlignmentPanel) alignment).av);
+ }
+ @Override
+ public void refreshGUI()
+ {
+ // appJmolWindow.repaint();
+ javax.swing.SwingUtilities.invokeLater(new Runnable()
+ {
+ public void run()
+ {
+ cvf.updateTitleAndMenus();
+ cvf.revalidate();
+ }
+ });
+ }
+
+ public void updateColours(Object source)
+ {
+ AlignmentPanel ap = (AlignmentPanel) source, topap;
+ // ignore events from panels not used to colour this view
+ if (!cvf.isUsedforcolourby(ap))
+ return;
+ if (!isLoadingFromArchive())
+ {
+ colourBySequence(ap.av.getShowSequenceFeatures(), ap);
+ }
+ }
+ @Override
+ public void releaseReferences(Object svl)
+ {
+ // TODO Auto-generated method stub
+
+ }
+
+ @Override
+ protected void releaseUIResources()
+ {
+ // TODO Auto-generated method stub
+
+ }
+
+ @Override
+ public void refreshPdbEntries()
+ {
+ // TODO Auto-generated method stub
+
+ }
+
+ @Override
+ public void showUrl(String url, String target)
+ {
+ // TODO Auto-generated method stub
+
+ }
+}