- boolean showAnnotation = true;
- // TODO: in applet this was getSequenceConsensusHash()
- // check if it makes any functional difference: hconsensus or conservation
- if (av.getAlignmentConservationAnnotation() == null)
- {
- showAnnotation = false;
- }
- od = new OverviewDimensions(av.getPosProps(), showAnnotation);