HMMFile file = new HMMFile(
new FileParse(hmmFile.getAbsolutePath(), DataSourceType.FILE));
SequenceI hmmSeq = file.getHMM().getConsensusSequence();
HMMFile file = new HMMFile(
new FileParse(hmmFile.getAbsolutePath(), DataSourceType.FILE));
SequenceI hmmSeq = file.getHMM().getConsensusSequence();