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JAL-3899 Update usages of uniquify and deuniquify.
[jalview.git]
/
src
/
jalview
/
hmmer
/
Search.java
diff --git
a/src/jalview/hmmer/Search.java
b/src/jalview/hmmer/Search.java
index
ceb79e5
..
6c3a71d
100644
(file)
--- a/
src/jalview/hmmer/Search.java
+++ b/
src/jalview/hmmer/Search.java
@@
-1,5
+1,6
@@
package jalview.hmmer;
package jalview.hmmer;
+import jalview.analysis.SeqsetUtils.SequenceInfo;
import jalview.datamodel.Alignment;
import jalview.datamodel.AlignmentAnnotation;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.Alignment;
import jalview.datamodel.AlignmentAnnotation;
import jalview.datamodel.AlignmentI;
@@
-15,6
+16,7
@@
import java.io.FileReader;
import java.io.IOException;
import java.util.Hashtable;
import java.util.List;
import java.io.IOException;
import java.util.Hashtable;
import java.util.List;
+import java.util.Map;
import java.util.Scanner;
public abstract class Search extends HmmerCommand
import java.util.Scanner;
public abstract class Search extends HmmerCommand
@@
-34,7
+36,7
@@
public abstract class Search extends HmmerCommand
boolean searchAlignment = true;
boolean searchAlignment = true;
- Hashtable sequencesHash;
+ Map<String, SequenceInfo> sequencesHash;
public Search(AlignFrame alignFrame, List<ArgumentI> args)
{
public Search(AlignFrame alignFrame, List<ArgumentI> args)
{