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fileFormat enum wip changes
[jalview.git]
/
src
/
jalview
/
io
/
AMSAFile.java
diff --git
a/src/jalview/io/AMSAFile.java
b/src/jalview/io/AMSAFile.java
index
f82407e
..
798249f
100644
(file)
--- a/
src/jalview/io/AMSAFile.java
+++ b/
src/jalview/io/AMSAFile.java
@@
-22,6
+22,7
@@
package jalview.io;
import jalview.datamodel.AlignmentAnnotation;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.AlignmentAnnotation;
import jalview.datamodel.AlignmentI;
+import jalview.datamodel.SequenceI;
public class AMSAFile extends jalview.io.FastaFile
{
public class AMSAFile extends jalview.io.FastaFile
{
@@
-41,9
+42,9
@@
public class AMSAFile extends jalview.io.FastaFile
*
* @return DOCUMENT ME!
*/
*
* @return DOCUMENT ME!
*/
- public String print()
+ public String print(SequenceI[] sqs, boolean jvsuffix)
{
{
- super.print(getSeqsAsArray());
+ super.print(sqs, jvsuffix);
AlignmentAnnotation aa;
if (al.getAlignmentAnnotation() != null)
AlignmentAnnotation aa;
if (al.getAlignmentAnnotation() != null)