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Merge branch 'feature/JAL-2909bamfiles_features' into features/JAL-2909_bamImport2_11
[jalview.git]
/
src
/
jalview
/
io
/
AlignmentFileReaderI.java
diff --git
a/src/jalview/io/AlignmentFileReaderI.java
b/src/jalview/io/AlignmentFileReaderI.java
index
a471d9b
..
fe47c8a
100644
(file)
--- a/
src/jalview/io/AlignmentFileReaderI.java
+++ b/
src/jalview/io/AlignmentFileReaderI.java
@@
-20,12
+20,12
@@
*/
package jalview.io;
*/
package jalview.io;
-import jalview.api.AlignExportSettingI;
-import jalview.api.AlignmentViewPanel;
import jalview.api.FeatureSettingsModelI;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.SequenceI;
import jalview.api.FeatureSettingsModelI;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.SequenceI;
+import java.io.IOException;
+
public interface AlignmentFileReaderI
{
public interface AlignmentFileReaderI
{
@@
-47,4
+47,13
@@
public interface AlignmentFileReaderI
FeatureSettingsModelI getFeatureColourScheme();
FeatureSettingsModelI getFeatureColourScheme();
+ /**
+ * Get a string array resulting from preprocessing the file
+ *
+ * @return preprocess result
+ */
+ Object[] preprocess();
+
+ public abstract void parse() throws IOException;
+
}
}