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Add support RNAML format
[jalview.git]
/
src
/
jalview
/
io
/
StockholmFile.java
diff --git
a/src/jalview/io/StockholmFile.java
b/src/jalview/io/StockholmFile.java
index
6b60cd5
..
2827191
100644
(file)
--- a/
src/jalview/io/StockholmFile.java
+++ b/
src/jalview/io/StockholmFile.java
@@
-23,7
+23,15
@@
package jalview.io;
import java.io.*;
\r
import java.util.*;
\r
\r
import java.io.*;
\r
import java.util.*;
\r
\r
+import javax.xml.parsers.ParserConfigurationException;
\r
+
\r
+import org.xml.sax.SAXException;
\r
+
\r
import com.stevesoft.pat.*;
\r
import com.stevesoft.pat.*;
\r
+
\r
+import fr.orsay.lri.varna.exceptions.ExceptionFileFormatOrSyntax;
\r
+import fr.orsay.lri.varna.exceptions.ExceptionLoadingFailed;
\r
+import fr.orsay.lri.varna.exceptions.ExceptionPermissionDenied;
\r
import jalview.datamodel.*;
\r
import jalview.analysis.Rna;
\r
\r
import jalview.datamodel.*;
\r
import jalview.analysis.Rna;
\r
\r
@@
-49,12
+57,12
@@
public class StockholmFile extends AlignFile
{
\r
}
\r
\r
{
\r
}
\r
\r
- public StockholmFile(String inFile, String type) throws IOException
\r
+ public StockholmFile(String inFile, String type) throws IOException, ExceptionFileFormatOrSyntax, ParserConfigurationException, SAXException, ExceptionPermissionDenied, ExceptionLoadingFailed
\r
{
\r
super(inFile, type);
\r
}
\r
\r
{
\r
super(inFile, type);
\r
}
\r
\r
- public StockholmFile(FileParse source) throws IOException
\r
+ public StockholmFile(FileParse source) throws IOException, ExceptionFileFormatOrSyntax, ParserConfigurationException, SAXException, ExceptionPermissionDenied, ExceptionLoadingFailed
\r
{
\r
super(source);
\r
}
\r
{
\r
super(source);
\r
}
\r