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FileParse object can be re-used to read different files concatenated together
[jalview.git]
/
src
/
jalview
/
io
/
StockholmFile.java
diff --git
a/src/jalview/io/StockholmFile.java
b/src/jalview/io/StockholmFile.java
index
945b8c5
..
d5f3cc2
100644
(file)
--- a/
src/jalview/io/StockholmFile.java
+++ b/
src/jalview/io/StockholmFile.java
@@
-53,7
+53,10
@@
public class StockholmFile extends AlignFile
{
\r
super(inFile, type);
\r
}
\r
{
\r
super(inFile, type);
\r
}
\r
-
\r
+ public StockholmFile(FileParse source) throws IOException
\r
+ {
\r
+ super(source);
\r
+ }
\r
public void initData()
\r
{
\r
super.initData();
\r
public void initData()
\r
{
\r
super.initData();
\r
@@
-221,6
+224,7
@@
public class StockholmFile extends AlignFile
// + ": " + seq);
\r
this.seqs.addElement(seqO);
\r
}
\r
// + ": " + seq);
\r
this.seqs.addElement(seqO);
\r
}
\r
+ return; // finished parsing this segment of source
\r
}
\r
else if (!r.search(line))
\r
{
\r
}
\r
else if (!r.search(line))
\r
{
\r