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Merge branch 'trailm' into trial_fixMakeCDSDBRefPropagation
[jalview.git]
/
src
/
jalview
/
io
/
StructureFile.java
diff --git
a/src/jalview/io/StructureFile.java
b/src/jalview/io/StructureFile.java
index
fc0e207
..
f095383
100644
(file)
--- a/
src/jalview/io/StructureFile.java
+++ b/
src/jalview/io/StructureFile.java
@@
-117,7
+117,9
@@
public abstract class StructureFile extends AlignFile
DBRefEntry sourceDBRef = new DBRefEntry();
sourceDBRef.setAccessionId(getId());
sourceDBRef.setSource(DBRefSource.PDB);
DBRefEntry sourceDBRef = new DBRefEntry();
sourceDBRef.setAccessionId(getId());
sourceDBRef.setSource(DBRefSource.PDB);
- pdbSequence.setSourceDBRef(sourceDBRef);
+ // TODO: specify version for 'PDB' database ref if it is read from a file.
+ // TODO: decide if jalview.io should be creating primary refs!
+ sourceDBRef.setVersion("");
pdbSequence.addPDBId(entry);
pdbSequence.addDBRef(sourceDBRef);
SequenceI chainseq = pdbSequence;
pdbSequence.addPDBId(entry);
pdbSequence.addDBRef(sourceDBRef);
SequenceI chainseq = pdbSequence;