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Merge branch 'Jalview-JS/develop' into merge_js_develop
[jalview.git]
/
src
/
jalview
/
io
/
gff
/
InterProScanHelper.java
diff --git
a/src/jalview/io/gff/InterProScanHelper.java
b/src/jalview/io/gff/InterProScanHelper.java
index
948cdd2
..
141b677
100644
(file)
--- a/
src/jalview/io/gff/InterProScanHelper.java
+++ b/
src/jalview/io/gff/InterProScanHelper.java
@@
-108,7
+108,7
@@
public class InterProScanHelper extends Gff3Helper
*/
public static boolean recognises(String[] columns)
{
*/
public static boolean recognises(String[] columns)
{
- SequenceOntologyI so = SequenceOntologyFactory.getInstance();
+ SequenceOntologyI so = SequenceOntologyFactory.getSequenceOntology();
String type = columns[TYPE_COL];
if (so.isA(type, SequenceOntologyI.PROTEIN_MATCH)
|| (".".equals(columns[SOURCE_COL])
String type = columns[TYPE_COL];
if (so.isA(type, SequenceOntologyI.PROTEIN_MATCH)
|| (".".equals(columns[SOURCE_COL])