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JAL-3899 Update usages of uniquify and deuniquify.
[jalview.git]
/
src
/
jalview
/
io
/
packed
/
JalviewDataset.java
diff --git
a/src/jalview/io/packed/JalviewDataset.java
b/src/jalview/io/packed/JalviewDataset.java
index
9f84c16
..
d4047d1
100644
(file)
--- a/
src/jalview/io/packed/JalviewDataset.java
+++ b/
src/jalview/io/packed/JalviewDataset.java
@@
-20,6
+20,7
@@
*/
package jalview.io.packed;
*/
package jalview.io.packed;
+import jalview.analysis.SeqsetUtils.SequenceInfo;
import jalview.analysis.TreeModel;
import jalview.api.FeatureColourI;
import jalview.datamodel.AlignmentI;
import jalview.analysis.TreeModel;
import jalview.api.FeatureColourI;
import jalview.datamodel.AlignmentI;
@@
-76,7
+77,7
@@
public class JalviewDataset
/**
* @return the seqDetails
*/
/**
* @return the seqDetails
*/
- public Hashtable getSeqDetails()
+ public Map<String, SequenceInfo> getSeqDetails()
{
return seqDetails;
}
{
return seqDetails;
}
@@
-193,7
+194,7
@@
public class JalviewDataset
/**
* original identity of each sequence in results
*/
/**
* original identity of each sequence in results
*/
- Hashtable seqDetails;
+ Map<String, SequenceInfo> seqDetails;
public boolean relaxedIdMatching = false;
public boolean relaxedIdMatching = false;
@@
-211,7
+212,7
@@
public class JalviewDataset
* @param parentAlignment
*/
public JalviewDataset(AlignmentI aldataset,
* @param parentAlignment
*/
public JalviewDataset(AlignmentI aldataset,
- Map<String, FeatureColourI> fc, Hashtable seqDets)
+ Map<String, FeatureColourI> fc, Map<String, SequenceInfo> seqDets)
{
// TODO not used - remove?
this(aldataset, fc, seqDets, null);
{
// TODO not used - remove?
this(aldataset, fc, seqDets, null);
@@
-233,7
+234,7
@@
public class JalviewDataset
* with.
*/
public JalviewDataset(AlignmentI aldataset,
* with.
*/
public JalviewDataset(AlignmentI aldataset,
- Map<String, FeatureColourI> fc, Hashtable seqDets,
+ Map<String, FeatureColourI> fc, Map<String, SequenceInfo> seqDets,
AlignmentI parentAlignment)
{
this();
AlignmentI parentAlignment)
{
this();