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JAL-3541 selectively merged build.gradle and gradle.properties
[jalview.git]
/
src
/
jalview
/
io
/
vamsas
/
Datasetsequence.java
diff --git
a/src/jalview/io/vamsas/Datasetsequence.java
b/src/jalview/io/vamsas/Datasetsequence.java
index
a399c04
..
d24e947
100644
(file)
--- a/
src/jalview/io/vamsas/Datasetsequence.java
+++ b/
src/jalview/io/vamsas/Datasetsequence.java
@@
-180,13
+180,13
@@
public class Datasetsequence extends DatastoreItem
if (sq.getDatasetSequence() == null && sq.getDBRefs() != null)
{
// only sync database references for dataset sequences
if (sq.getDatasetSequence() == null && sq.getDBRefs() != null)
{
// only sync database references for dataset sequences
- DBRefEntry[] entries = sq.getDBRefs();
+ List<DBRefEntry> entries = sq.getDBRefs();
// jalview.datamodel.DBRefEntry dbentry;
// jalview.datamodel.DBRefEntry dbentry;
- for (int db = 0; db < entries.length; db++)
+ for (int db = 0, dn = entries.size(); db < dn; db++)
{
modifiedthedoc |= new jalview.io.vamsas.Dbref(datastore,
// dbentry =
{
modifiedthedoc |= new jalview.io.vamsas.Dbref(datastore,
// dbentry =
- entries[db], sq, (Sequence) vobj, dataset).docWasUpdated();
+ entries.get(db), sq, (Sequence) vobj, dataset).docWasUpdated();
}
}