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JAL-3210 Improvements to eclipse detection. New src tree and SwingJS updated from...
[jalview.git]
/
src
/
jalview
/
io
/
vamsas
/
Rangetype.java
diff --git
a/src/jalview/io/vamsas/Rangetype.java
b/src/jalview/io/vamsas/Rangetype.java
index
b4580f0
..
ee4fa83
100644
(file)
--- a/
src/jalview/io/vamsas/Rangetype.java
+++ b/
src/jalview/io/vamsas/Rangetype.java
@@
-148,7
+148,7
@@
public abstract class Rangetype extends DatastoreItem
int se_end = se[1 - se[2]] + (se[2] == 0 ? 1 : -1);
for (int p = se[se[2]]; p != se_end; p += se[2] == 0 ? 1 : -1)
{
int se_end = se[1 - se[2]] + (se[2] == 0 ? 1 : -1);
for (int p = se[se[2]]; p != se_end; p += se[2] == 0 ? 1 : -1)
{
- posList.add(Integer.valueOf(p));
+ posList.add(new Integer(p));
}
}
}
}
}
}
@@
-159,7
+159,7
@@
public abstract class Rangetype extends DatastoreItem
for (int p = 0, pSize = dseta.getPosCount(); p < pSize; p++)
{
pos = dseta.getPos(p).getI();
for (int p = 0, pSize = dseta.getPosCount(); p < pSize; p++)
{
pos = dseta.getPos(p).getI();
- posList.add(Integer.valueOf(pos));
+ posList.add(new Integer(pos));
}
}
}
}
}
}
@@
-193,8
+193,8
@@
public abstract class Rangetype extends DatastoreItem
for (int s = 0, sSize = range.getSegCount(); s < sSize; s++)
{
se = getSegRange(range.getSeg(s), false);
for (int s = 0, sSize = range.getSegCount(); s < sSize; s++)
{
se = getSegRange(range.getSeg(s), false);
- posList.addElement(Integer.valueOf(se[0]));
- posList.addElement(Integer.valueOf(se[1]));
+ posList.addElement(new Integer(se[0]));
+ posList.addElement(new Integer(se[1]));
}
}
else if (range.getPosCount() > 0)
}
}
else if (range.getPosCount() > 0)
@@
-204,8
+204,8
@@
public abstract class Rangetype extends DatastoreItem
for (int p = 0, pSize = range.getPosCount(); p < pSize; p++)
{
pos = range.getPos(p).getI();
for (int p = 0, pSize = range.getPosCount(); p < pSize; p++)
{
pos = range.getPos(p).getI();
- posList.add(Integer.valueOf(pos));
- posList.add(Integer.valueOf(pos));
+ posList.add(new Integer(pos));
+ posList.add(new Integer(pos));
}
}
}
}
}
}