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JAL-3210 Barebones gradle/buildship/eclipse. See README
[jalview.git]
/
src
/
jalview
/
io
/
vamsas
/
Tree.java
diff --git
a/src/jalview/io/vamsas/Tree.java
b/src/jalview/io/vamsas/Tree.java
index
e4e0b6c
..
00e4fbc
100644
(file)
--- a/
src/jalview/io/vamsas/Tree.java
+++ b/
src/jalview/io/vamsas/Tree.java
@@
-443,7
+443,7
@@
public class Tree extends DatastoreItem
Integer nindx = (Integer) nodespecs.get(nname);
if (nindx == null)
{
Integer nindx = (Integer) nodespecs.get(nname);
if (nindx == null)
{
- nindx = new Integer(1);
+ nindx = Integer.valueOf(1);
}
nname = nindx.toString() + " " + nname;
return nname;
}
nname = nindx.toString() + " " + nname;
return nname;
@@
-465,7
+465,7
@@
public class Tree extends DatastoreItem
String oval = nodespec.substring(0, nodespec.indexOf(' '));
try
{
String oval = nodespec.substring(0, nodespec.indexOf(' '));
try
{
- occurence = new Integer(oval).intValue();
+ occurence = Integer.valueOf(oval).intValue();
} catch (Exception e)
{
System.err.println("Invalid nodespec '" + nodespec + "'");
} catch (Exception e)
{
System.err.println("Invalid nodespec '" + nodespec + "'");
@@
-517,7
+517,7
@@
public class Tree extends DatastoreItem
* referenced in input data has already been associated with jalview objects.
*
* @param tp
* referenced in input data has already been associated with jalview objects.
*
* @param tp
- * @param loaderFrame
+ * @param alignFrame
* @return Object[] { AlignmentView, AlignmentI - reference alignment for
* input }
*/
* @return Object[] { AlignmentView, AlignmentI - reference alignment for
* input }
*/