git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
JAL-1347 RNA Structure consensus follows the alignment viewport consensus rendering...
[jalview.git]
/
src
/
jalview
/
renderer
/
AnnotationRenderer.java
diff --git
a/src/jalview/renderer/AnnotationRenderer.java
b/src/jalview/renderer/AnnotationRenderer.java
index
bafa3e7
..
09152d6
100644
(file)
--- a/
src/jalview/renderer/AnnotationRenderer.java
+++ b/
src/jalview/renderer/AnnotationRenderer.java
@@
-240,7
+240,7
@@
public class AnnotationRenderer
}
// TODO extend annotation row to enable dynamic and static profile data to
// be stored
}
// TODO extend annotation row to enable dynamic and static profile data to
// be stored
- if (aa.groupRef == null && aa.sequenceRef == null && av_renderProfile)
+ if (aa.groupRef == null && aa.sequenceRef == null)
{
return AAFrequency.extractProfile(hconsensus[column],
av_ignoreGapsConsensus);
{
return AAFrequency.extractProfile(hconsensus[column],
av_ignoreGapsConsensus);
@@
-262,7
+262,7
@@
public class AnnotationRenderer
// to
// be stored
if (aa.groupRef == null && aa.sequenceRef == null
// to
// be stored
if (aa.groupRef == null && aa.sequenceRef == null
- && av_renderProfile && hStrucConsensus != null
+ && hStrucConsensus != null
&& hStrucConsensus.length > column)
{
return StructureFrequency.extractProfile(hStrucConsensus[column],
&& hStrucConsensus.length > column)
{
return StructureFrequency.extractProfile(hStrucConsensus[column],