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Merge branch 'test_paolo_JAL-1065' into Tcoffee_JAL-1065
[jalview.git]
/
src
/
jalview
/
schemes
/
ColourSchemeI.java
diff --git
a/src/jalview/schemes/ColourSchemeI.java
b/src/jalview/schemes/ColourSchemeI.java
index
e8e5828
..
273273f
100755
(executable)
--- a/
src/jalview/schemes/ColourSchemeI.java
+++ b/
src/jalview/schemes/ColourSchemeI.java
@@
-19,11
+19,14
@@
package jalview.schemes;
import java.awt.Color;
import java.awt.Color;
+import jalview.datamodel.AnnotatedCollectionI;
+import jalview.datamodel.SequenceI;
+
public interface ColourSchemeI
{
public Color findColour(char c);
public interface ColourSchemeI
{
public Color findColour(char c);
- public Color findColour(char c, int j, int sequenceIndex);
+ public Color findColour(char c, int j, SequenceI seq);
public void setConsensus(java.util.Hashtable[] h);
public void setConsensus(java.util.Hashtable[] h);
@@
-39,4
+42,6
@@
public interface ColourSchemeI
public void setThreshold(int ct, boolean ignoreGaps);
public void setThreshold(int ct, boolean ignoreGaps);
+ public void alignmentChanged(AnnotatedCollectionI alignment);
+
}
}