git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
Merge branch 'test_paolo_JAL-1065' into Tcoffee_JAL-1065
[jalview.git]
/
src
/
jalview
/
schemes
/
ResidueColourScheme.java
diff --git
a/src/jalview/schemes/ResidueColourScheme.java
b/src/jalview/schemes/ResidueColourScheme.java
index
cc7f0d8
..
ea9e44b
100755
(executable)
--- a/
src/jalview/schemes/ResidueColourScheme.java
+++ b/
src/jalview/schemes/ResidueColourScheme.java
@@
-19,6
+19,8
@@
package jalview.schemes;
import jalview.analysis.AAFrequency;
import jalview.analysis.Conservation;
import jalview.analysis.AAFrequency;
import jalview.analysis.Conservation;
+import jalview.datamodel.AnnotatedCollectionI;
+import jalview.datamodel.SequenceI;
import java.awt.Color;
import java.util.Hashtable;
import java.awt.Color;
import java.util.Hashtable;
@@
-83,7
+85,7
@@
public class ResidueColourScheme implements ColourSchemeI
}
@Override
}
@Override
- public Color findColour(char c, int j, int sequenceIndex)
+ public Color findColour(char c, int j, SequenceI seq)
{
Color currentColour;
{
Color currentColour;
@@
-103,6
+105,7
@@
public class ResidueColourScheme implements ColourSchemeI
return currentColour;
}
return currentColour;
}
+ @Override public void alignmentChanged(AnnotatedCollectionI alignment) {};
/**
* Get the percentage threshold for this colour scheme
/**
* Get the percentage threshold for this colour scheme