+ int structureResNo = map.getValue()[PDB_RES_POS];
+
+ /*
+ * find the atom number in the chain for this residue number
+ * NB only CA or P atoms have been saved in the chain - see
+ * JmolParser.convertSignificantAtoms
+ */
+ int atomIndex = getAtomIndex(structureResNo, chain.atoms);
+ if (atomIndex == StructureMapping.UNASSIGNED)
+ {
+ notFound.add(map.getKey());
+ }
+ else