git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
JAL-2136 JAL-2137 Improvements: enable STRUCTMODEL annotation statement to be less...
[jalview.git]
/
src
/
jalview
/
structure
/
StructureSelectionManager.java
diff --git
a/src/jalview/structure/StructureSelectionManager.java
b/src/jalview/structure/StructureSelectionManager.java
index
671c325
..
5ff2da4
100644
(file)
--- a/
src/jalview/structure/StructureSelectionManager.java
+++ b/
src/jalview/structure/StructureSelectionManager.java
@@
-600,11
+600,15
@@
public class StructureSelectionManager
setProgressBar(null);
setProgressBar(MessageManager
.getString("status.obtaining_mapping_with_phyre2_template_alignment"));
setProgressBar(null);
setProgressBar(MessageManager
.getString("status.obtaining_mapping_with_phyre2_template_alignment"));
+ String fastaFile = getPhyre2FastaFileFor(pdbFile);
StructureMapping phyre2ModelMapping = new Phyre2Client(pdb)
StructureMapping phyre2ModelMapping = new Phyre2Client(pdb)
- .getStructureMapping(seq, pdbFile,
- getPhyre2FastaFileFor(pdbFile), " ");
-
+ .getStructureMapping(seq, pdbFile, fastaFile, " ");
seqToStrucMapping.add(phyre2ModelMapping);
seqToStrucMapping.add(phyre2ModelMapping);
+ maxChain.makeExactMapping(maxAlignseq, seq);
+ maxChain.transferRESNUMFeatures(seq, null);
+ jalview.datamodel.Mapping sqmpping = maxAlignseq
+ .getMappingFromS1(false);
+ maxChain.transferResidueAnnotation(phyre2ModelMapping, sqmpping);
ds.addPDBId(maxChain.sequence.getAllPDBEntries().get(0));
}
else
ds.addPDBId(maxChain.sequence.getAllPDBEntries().get(0));
}
else