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JAL-3210 Barebones gradle/buildship/eclipse. See README
[jalview.git]
/
src
/
jalview
/
structures
/
models
/
AAStructureBindingModel.java
diff --git
a/src/jalview/structures/models/AAStructureBindingModel.java
b/src/jalview/structures/models/AAStructureBindingModel.java
index
a98e4b1
..
2528286
100644
(file)
--- a/
src/jalview/structures/models/AAStructureBindingModel.java
+++ b/
src/jalview/structures/models/AAStructureBindingModel.java
@@
-355,8
+355,8
@@
public abstract class AAStructureBindingModel
{ Integer.valueOf(pe).toString() }));
}
final String nullChain = "TheNullChain";
{ Integer.valueOf(pe).toString() }));
}
final String nullChain = "TheNullChain";
- List<SequenceI> s = new ArrayList<>();
- List<String> c = new ArrayList<>();
+ List<SequenceI> s = new ArrayList<SequenceI>();
+ List<String> c = new ArrayList<String>();
if (getChains() == null)
{
setChains(new String[getPdbCount()][]);
if (getChains() == null)
{
setChains(new String[getPdbCount()][]);
@@
-425,8
+425,8
@@
public abstract class AAStructureBindingModel
public synchronized PDBEntry[] addSequenceAndChain(PDBEntry[] pdbe,
SequenceI[][] seq, String[][] chns)
{
public synchronized PDBEntry[] addSequenceAndChain(PDBEntry[] pdbe,
SequenceI[][] seq, String[][] chns)
{
- List<PDBEntry> v = new ArrayList<>();
- List<int[]> rtn = new ArrayList<>();
+ List<PDBEntry> v = new ArrayList<PDBEntry>();
+ List<int[]> rtn = new ArrayList<int[]>();
for (int i = 0; i < getPdbCount(); i++)
{
v.add(getPdbEntry(i));
for (int i = 0; i < getPdbCount(); i++)
{
v.add(getPdbEntry(i));
@@
-512,10
+512,12
@@
public abstract class AAStructureBindingModel
}
/**
}
/**
+ * Returns a readable description of all mappings for the wrapped pdbfile to
+ * any mapped sequences
*
*
- * @return a readable description of all mappings for the wrapped pdbfile to
- * any mapped sequences
- *
+ * @param pdbfile
+ * @param seqs
+ * @return
*/
public String printMappings()
{
*/
public String printMappings()
{