{
ArrayList<SequenceFeature> tmp = new ArrayList<SequenceFeature>();
SequenceFeature[] features = sequence.getSequenceFeatures();
{
ArrayList<SequenceFeature> tmp = new ArrayList<SequenceFeature>();
SequenceFeature[] features = sequence.getSequenceFeatures();
- if (!av.areFeaturesDisplayed()
- || !av.getFeaturesDisplayed().isVisible(
- features[i].getType()))
+ if (!av.areFeaturesDisplayed() || !av.getFeaturesDisplayed()
+ .isVisible(features[i].getType()))
&& featureGroups.containsKey(features[i].featureGroup)
&& !featureGroups.get(features[i].featureGroup)
.booleanValue())
&& featureGroups.containsKey(features[i].featureGroup)
&& !featureGroups.get(features[i].featureGroup)
.booleanValue())
// lies between start and end
if ((features[i].getBegin() == res || features[i].getEnd() == res)
|| (!features[i].isContactFeature()
// lies between start and end
if ((features[i].getBegin() == res || features[i].getEnd() == res)
|| (!features[i].isContactFeature()
{
// conflict between applet and desktop - featureGroups returns the map in
// the desktop featureRenderer
{
// conflict between applet and desktop - featureGroups returns the map in
// the desktop featureRenderer
- return (featureGroups == null) ? Arrays.asList(new String[0]) : Arrays
- .asList(featureGroups.keySet().toArray(new String[0]));
+ return (featureGroups == null) ? Arrays.asList(new String[0])
+ : Arrays.asList(featureGroups.keySet().toArray(new String[0]));