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apply jalview code style
[jalview.git]
/
src
/
jalview
/
ws
/
DasSequenceFeatureFetcher.java
diff --git
a/src/jalview/ws/DasSequenceFeatureFetcher.java
b/src/jalview/ws/DasSequenceFeatureFetcher.java
index
ab02baf
..
4262f7e
100644
(file)
--- a/
src/jalview/ws/DasSequenceFeatureFetcher.java
+++ b/
src/jalview/ws/DasSequenceFeatureFetcher.java
@@
-240,8
+240,7
@@
public class DasSequenceFeatureFetcher
}
\r
} catch (Exception ex)
\r
{
\r
}
\r
} catch (Exception ex)
\r
{
\r
- debug(
\r
- "Exception whilst setting default feature sources from registry and local preferences.",
\r
+ debug("Exception whilst setting default feature sources from registry and local preferences.",
\r
ex);
\r
}
\r
}
\r
ex);
\r
}
\r
}
\r
@@
-511,8
+510,8
@@
public class DasSequenceFeatureFetcher
for (int i = 0; i < features.length; i++)
\r
{
\r
// standard DAS feature-> jalview sequence feature transformation
\r
for (int i = 0; i < features.length; i++)
\r
{
\r
// standard DAS feature-> jalview sequence feature transformation
\r
- SequenceFeature f = newSequenceFeature(features[i], source
\r
- .getNickname());
\r
+ SequenceFeature f = newSequenceFeature(features[i],
\r
+ source.getNickname());
\r
if (!parseSeqFeature(seq, f, features[i], source))
\r
{
\r
if (dbref.getMap() != null && f.getBegin() > 0
\r
if (!parseSeqFeature(seq, f, features[i], source))
\r
{
\r
if (dbref.getMap() != null && f.getBegin() > 0
\r
@@
-615,8
+614,8
@@
public class DasSequenceFeatureFetcher
for (int i = 0; i < features.length; i++)
\r
{
\r
// standard DAS feature-> jalview sequence feature transformation
\r
for (int i = 0; i < features.length; i++)
\r
{
\r
// standard DAS feature-> jalview sequence feature transformation
\r
- SequenceFeature f = newSequenceFeature(features[i], source
\r
- .getNickname());
\r
+ SequenceFeature f = newSequenceFeature(features[i],
\r
+ source.getNickname());
\r
if (!parseSeqFeature(seq, f, features[i], source))
\r
{
\r
// just add as a simple sequence feature
\r
if (!parseSeqFeature(seq, f, features[i], source))
\r
{
\r
// just add as a simple sequence feature
\r
@@
-805,8
+804,9
@@
public class DasSequenceFeatureFetcher
{
\r
}
\r
\r
{
\r
}
\r
\r
- SequenceFeature f = new SequenceFeature((String) dasfeature
\r
- .get("TYPE"), desc, start, end, score, nickname);
\r
+ SequenceFeature f = new SequenceFeature(
\r
+ (String) dasfeature.get("TYPE"), desc, start, end, score,
\r
+ nickname);
\r
\r
if (dasfeature.containsKey("LINK"))
\r
{
\r
\r
if (dasfeature.containsKey("LINK"))
\r
{
\r