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Fixed some broken tests
[jalview.git]
/
src
/
jalview
/
ws
/
dbsources
/
Pdb.java
diff --git
a/src/jalview/ws/dbsources/Pdb.java
b/src/jalview/ws/dbsources/Pdb.java
index
76e8351
..
c75a36f
100644
(file)
--- a/
src/jalview/ws/dbsources/Pdb.java
+++ b/
src/jalview/ws/dbsources/Pdb.java
@@
-20,28
+20,23
@@
*/
package jalview.ws.dbsources;
*/
package jalview.ws.dbsources;
-import jalview.datamodel.Alignment;
import jalview.datamodel.AlignmentAnnotation;
import jalview.datamodel.AlignmentAnnotation;
+import jalview.datamodel.AlignmentI;
import jalview.datamodel.DBRefEntry;
import jalview.datamodel.DBRefSource;
import jalview.datamodel.PDBEntry;
import jalview.datamodel.SequenceI;
import jalview.datamodel.DBRefEntry;
import jalview.datamodel.DBRefSource;
import jalview.datamodel.PDBEntry;
import jalview.datamodel.SequenceI;
+import jalview.io.FormatAdapter;
+import jalview.util.MessageManager;
+import jalview.ws.ebi.EBIFetchClient;
+import jalview.ws.seqfetcher.DbSourceProxy;
import java.util.ArrayList;
import java.util.List;
import java.util.Vector;
import java.util.ArrayList;
import java.util.List;
import java.util.Vector;
-import MCview.PDBChain;
-import MCview.PDBfile;
-
import com.stevesoft.pat.Regex;
import com.stevesoft.pat.Regex;
-import jalview.datamodel.AlignmentI;
-import jalview.io.FormatAdapter;
-import jalview.util.MessageManager;
-import jalview.ws.ebi.EBIFetchClient;
-import jalview.ws.seqfetcher.DbSourceProxy;
-
/**
* @author JimP
*
/**
* @author JimP
*
@@
-145,11
+140,11
@@
public class Pdb extends EbiFileRetrievedProxy implements DbSourceProxy
{
String chid = null;
// Mapping map=null;
{
String chid = null;
// Mapping map=null;
- for (PDBEntry pid : (Vector<PDBEntry>) pdbcs.getPDBId())
+ for (PDBEntry pid : pdbcs.getPDBId())
{
if (pid.getFile() == file)
{
{
if (pid.getFile() == file)
{
- chid = (String) pid.getProperty().get("CHAIN");
+ chid = pid.getChainCode();
}
;
}
;