git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
JAL-1705 refactoring etc for fetching Ensembl --> Uniprot
[jalview.git]
/
src
/
jalview
/
ws
/
dbsources
/
Uniprot.java
diff --git
a/src/jalview/ws/dbsources/Uniprot.java
b/src/jalview/ws/dbsources/Uniprot.java
index
455dcb5
..
12ebe90
100644
(file)
--- a/
src/jalview/ws/dbsources/Uniprot.java
+++ b/
src/jalview/ws/dbsources/Uniprot.java
@@
-271,7
+271,9
@@
public class Uniprot extends DbSourceProxyImpl
public static String getUniprotEntryId(UniprotEntry entry)
{
StringBuilder name = new StringBuilder(32);
public static String getUniprotEntryId(UniprotEntry entry)
{
StringBuilder name = new StringBuilder(32);
- name.append("UniProt/Swiss-Prot");
+ // name.append("UniProt/Swiss-Prot");
+ // use 'canonicalised' name for optimal id matching
+ name.append(DBRefSource.UNIPROT);
for (String accessionId : entry.getAccession())
{
name.append(BAR_DELIMITER);
for (String accessionId : entry.getAccession())
{
name.append(BAR_DELIMITER);