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Merge branch 'documentation/JAL-2675_release2102b1' into feature/JAL-2611
[jalview.git]
/
src
/
jalview
/
ws
/
jws1
/
Annotate3D.java
diff --git
a/src/jalview/ws/jws1/Annotate3D.java
b/src/jalview/ws/jws1/Annotate3D.java
index
bae0357
..
022ae6d
100644
(file)
--- a/
src/jalview/ws/jws1/Annotate3D.java
+++ b/
src/jalview/ws/jws1/Annotate3D.java
@@
-86,7
+86,8
@@
public class Annotate3D
AlignmentI al = null;
while (r.hasNext())
{
AlignmentI al = null;
while (r.hasNext())
{
- FileParse fp = new InputStreamParser(r.next(), source.getDataName());
+ FileParse fp = new InputStreamParser(r.next(),
+ source.getDataName());
AlignmentI nal = new FormatAdapter().readFromFile(fp,
FileFormat.Rnaml);
if (al == null)
AlignmentI nal = new FormatAdapter().readFromFile(fp,
FileFormat.Rnaml);
if (al == null)
@@
-107,9
+108,8
@@
public class Annotate3D
}
else
{
}
else
{
- throw new IOException(
- MessageManager
- .getString("exception.unexpected_handling_rnaml_translation_for_pdb"),
+ throw new IOException(MessageManager.getString(
+ "exception.unexpected_handling_rnaml_translation_for_pdb"),
x);
}
}
x);
}
}
@@
-180,8
+180,8
@@
public class Annotate3D
URL url = new URL(
"http://paradise-ibmc.u-strasbg.fr/webservices/annotate3d?data="
+ content);
URL url = new URL(
"http://paradise-ibmc.u-strasbg.fr/webservices/annotate3d?data="
+ content);
- BufferedReader is = new BufferedReader(new InputStreamReader(
- url.openStream()));
+ BufferedReader is = new BufferedReader(
+ new InputStreamReader(url.openStream()));
String str4;
while ((str4 = is.readLine()) != null)
{
String str4;
while ((str4 = is.readLine()) != null)
{