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JAL-3070 use ArgumentI in all public constructors, convert to service specific argume...
[jalview.git]
/
src
/
jalview
/
ws
/
jws2
/
JabawsMsaInterfaceAlignCalcWorker.java
diff --git
a/src/jalview/ws/jws2/JabawsMsaInterfaceAlignCalcWorker.java
b/src/jalview/ws/jws2/JabawsMsaInterfaceAlignCalcWorker.java
index
ee36d4a
..
5ccef8a
100644
(file)
--- a/
src/jalview/ws/jws2/JabawsMsaInterfaceAlignCalcWorker.java
+++ b/
src/jalview/ws/jws2/JabawsMsaInterfaceAlignCalcWorker.java
@@
-28,6
+28,7
@@
import jalview.datamodel.SequenceI;
import jalview.gui.AlignFrame;
import jalview.util.MessageManager;
import jalview.ws.jws2.jabaws2.Jws2Instance;
import jalview.gui.AlignFrame;
import jalview.util.MessageManager;
import jalview.ws.jws2.jabaws2.Jws2Instance;
+import jalview.ws.params.ArgumentI;
import jalview.ws.params.WsParamSetI;
import java.util.Iterator;
import jalview.ws.params.WsParamSetI;
import java.util.Iterator;
@@
-36,7
+37,6
@@
import java.util.List;
import compbio.data.msa.MsaWS;
import compbio.data.sequence.Alignment;
import compbio.data.sequence.Score;
import compbio.data.msa.MsaWS;
import compbio.data.sequence.Alignment;
import compbio.data.sequence.Score;
-import compbio.metadata.Argument;
import compbio.metadata.ChunkHolder;
import compbio.metadata.JobStatus;
import compbio.metadata.JobSubmissionException;
import compbio.metadata.ChunkHolder;
import compbio.metadata.JobStatus;
import compbio.metadata.JobSubmissionException;
@@
-60,7
+60,7
@@
public abstract class JabawsMsaInterfaceAlignCalcWorker
public JabawsMsaInterfaceAlignCalcWorker(Jws2Instance service,
AlignFrame alignFrame, WsParamSetI preset,
public JabawsMsaInterfaceAlignCalcWorker(Jws2Instance service,
AlignFrame alignFrame, WsParamSetI preset,
- List<Argument> paramset)
+ List<ArgumentI> paramset)
{
this(alignFrame.getCurrentView(), alignFrame.alignPanel);
this.guiProgress = alignFrame;
{
this(alignFrame.getCurrentView(), alignFrame.alignPanel);
this.guiProgress = alignFrame;