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JAL-1780 JAL-653 Format/AppletFormat import and export pipeline regularised, uses...
[jalview.git]
/
src
/
jalview
/
ws
/
seqfetcher
/
DbSourceProxyImpl.java
diff --git
a/src/jalview/ws/seqfetcher/DbSourceProxyImpl.java
b/src/jalview/ws/seqfetcher/DbSourceProxyImpl.java
index
719027f
..
0785dfa
100644
(file)
--- a/
src/jalview/ws/seqfetcher/DbSourceProxyImpl.java
+++ b/
src/jalview/ws/seqfetcher/DbSourceProxyImpl.java
@@
-20,7
+20,7
@@
*/
package jalview.ws.seqfetcher;
*/
package jalview.ws.seqfetcher;
-import jalview.datamodel.Alignment;
+import jalview.datamodel.AlignmentI;
import jalview.io.FormatAdapter;
import jalview.io.IdentifyFile;
import jalview.io.FormatAdapter;
import jalview.io.IdentifyFile;
@@
-118,9
+118,9
@@
public abstract class DbSourceProxyImpl implements DbSourceProxy
* @return null or a valid alignment
* @throws Exception
*/
* @return null or a valid alignment
* @throws Exception
*/
- protected Alignment parseResult(String result) throws Exception
+ protected AlignmentI parseResult(String result) throws Exception
{
{
- Alignment sequences = null;
+ AlignmentI sequences = null;
String format = new IdentifyFile().Identify(result, "Paste");
if (FormatAdapter.isValidFormat(format))
{
String format = new IdentifyFile().Identify(result, "Paste");
if (FormatAdapter.isValidFormat(format))
{