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Merge branch 'develop' into releases/Release_2_11_2_Branch
[jalview.git]
/
src
/
jalview
/
ws
/
sifts
/
SiftsClient.java
diff --git
a/src/jalview/ws/sifts/SiftsClient.java
b/src/jalview/ws/sifts/SiftsClient.java
index
5a03aea
..
0c707e5
100644
(file)
--- a/
src/jalview/ws/sifts/SiftsClient.java
+++ b/
src/jalview/ws/sifts/SiftsClient.java
@@
-432,8
+432,8
@@
public class SiftsClient implements SiftsClientI
.getMapRegion();
for (MapRegion mapRegion : mapRegions)
{
.getMapRegion();
for (MapRegion mapRegion : mapRegions)
{
- accessions
- .add(mapRegion.getDb().getDbAccessionId().toLowerCase(Locale.ROOT));
+ accessions.add(mapRegion.getDb().getDbAccessionId()
+ .toLowerCase(Locale.ROOT));
}
}
}
}
}
}
@@
-503,9
+503,11
@@
public class SiftsClient implements SiftsClientI
HashSet<String> dbRefAccessionIdsString = new HashSet<String>();
for (DBRefEntry dbref : seq.getDBRefs())
{
HashSet<String> dbRefAccessionIdsString = new HashSet<String>();
for (DBRefEntry dbref : seq.getDBRefs())
{
- dbRefAccessionIdsString.add(dbref.getAccessionId().toLowerCase(Locale.ROOT));
+ dbRefAccessionIdsString
+ .add(dbref.getAccessionId().toLowerCase(Locale.ROOT));
}
}
- dbRefAccessionIdsString.add(sourceDBRef.getAccessionId().toLowerCase(Locale.ROOT));
+ dbRefAccessionIdsString
+ .add(sourceDBRef.getAccessionId().toLowerCase(Locale.ROOT));
curDBRefAccessionIdsString = dbRefAccessionIdsString;
curSourceDBRef = sourceDBRef.getAccessionId();
curDBRefAccessionIdsString = dbRefAccessionIdsString;
curSourceDBRef = sourceDBRef.getAccessionId();
@@
-893,7
+895,8
@@
public class SiftsClient implements SiftsClientI
{
boolean isStrictMatch = true;
return isStrictMatch ? curSourceDBRef.equalsIgnoreCase(accession)
{
boolean isStrictMatch = true;
return isStrictMatch ? curSourceDBRef.equalsIgnoreCase(accession)
- : curDBRefAccessionIdsString.contains(accession.toLowerCase(Locale.ROOT));
+ : curDBRefAccessionIdsString
+ .contains(accession.toLowerCase(Locale.ROOT));
}
private boolean isFoundInSiftsEntry(String accessionId)
}
private boolean isFoundInSiftsEntry(String accessionId)